Yeast glycolytic oscillations that are not controlled by a single oscillophore: A new definition of oscillophore strength
Date
2005
Authors
Reijenga K.A.
Van Megen Y.M.G.A.
Kooi B.W.
Bakker B.M.
Snoep J.L.
Van Verseveld H.W.
Westerhoff H.V.
Journal Title
Journal ISSN
Volume Title
Publisher
Abstract
Biochemical oscillations, such as glycolytic oscillations, are often believed to be caused by a single so-called 'oscillophore'. The main characteristics of yeast glycolytic oscillations, such as frequency and amplitude, are however controlled by several enzymes. In this paper, we develop a method to quantify to which extent any enzyme determines the occurrence of oscillations. Principles extrapolated from metabolic control analysis are applied to calculate the control exerted by individual enzymes on the real and imaginary parts of the eigenvalues of the Jacobian matrix. We propose that the control exerted by an enzyme on the real part of the smallest eigenvalue, in terms of absolute value, quantifies to which extent that enzyme contributes to the emergence of instability. Likewise the control exerted by an enzyme on the imaginary part of complex eigenvalues may serve to quantify the extent to which that enzyme contributes to the tendency of the system to oscillate. The method was applied both to a core model and to a realistic model of yeast glycolytic oscillations. Both the control over stability and the control over oscillatory tendency were distributed among several enzymes, of which glucose transport, pyruvate decarboxylase and ATP utilization were the most important. The distributions of control were different for stability and oscillatory tendency, showing that control of instability does not imply control of oscillatory tendency nor vice versa. The control coefficients summed up to 1, suggesting the existence of a new summation theorem. These results constitute proof that glycolytic oscillations in yeast are not caused by a single oscillophore and provide a new, subtle, definition for the oscillophore strength of an enzyme. © 2004 Elsevier Ltd. All rights reserved.
Description
Keywords
adenosine triphosphate, enzyme activity, yeast, article, controlled study, correlation coefficient, enzyme activity, enzyme stability, frequency analysis, fungal genetics, fungal metabolism, glycolysis, mathematical computing, molecular biology, nonhuman, oscillation, priority journal, protein synthesis, technique, Biological Clocks, Glycolysis, Models, Biological, Phosphofructokinases, Yeasts
Citation
Journal of Theoretical Biology
232
3
232
3