New insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip data

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dc.contributor.authorColli, Liciaen_ZA
dc.contributor.authorMilanesi, Marcoen_ZA
dc.contributor.authorVajana, Eliaen_ZA
dc.contributor.authorIamartino, Danielaen_ZA
dc.contributor.authorBomba, Lorenzoen_ZA
dc.contributor.authorPuglisi, Francescoen_ZA
dc.contributor.authorDel Corvo, Marcelloen_ZA
dc.contributor.authorNicolazzi, Ezequiel L.en_ZA
dc.contributor.authorAhmed, Sahar S. E.en_ZA
dc.contributor.authorHerrera, Jesus R. V.en_ZA
dc.contributor.authorCruz, Libertadoen_ZA
dc.contributor.authorZhang, Shujunen_ZA
dc.contributor.authorLiang, Aixinen_ZA
dc.contributor.authorHua, Guohuaen_ZA
dc.contributor.authorYang, Liguoen_ZA
dc.contributor.authorHao, Xingjieen_ZA
dc.contributor.authorZuo, Fuyuanen_ZA
dc.contributor.authorLai, Song-Jiaen_ZA
dc.contributor.authorWang, Shuilianen_ZA
dc.contributor.authorLiu, Ruyuen_ZA
dc.contributor.authorGong, Yundengen_ZA
dc.contributor.authorMokhber, Mahdien_ZA
dc.contributor.authorMao, Yongjiangen_ZA
dc.contributor.authorGuan, Fengen_ZA
dc.contributor.authorVlaic, Augustinen_ZA
dc.contributor.authorVlaic, Bogdanen_ZA
dc.contributor.authorRamunno, Luigien_ZA
dc.contributor.authorCosenza, Gianfrancoen_ZA
dc.contributor.authorAhmad, Alien_ZA
dc.contributor.authorSoysal, Ihsanen_ZA
dc.contributor.authorUnal, Emel O.en_ZA
dc.contributor.authorKetudat-Cairns, Marienaen_ZA
dc.contributor.authorGarcia, Jose F.en_ZA
dc.contributor.authorUtsunomiya, Yuri T.en_ZA
dc.contributor.authorBaruselli, Pietro S.en_ZA
dc.contributor.authorAmaral, Maria E. J.en_ZA
dc.contributor.authorParnpai, Rangsunen_ZA
dc.contributor.authorDrummond, Marcela G.en_ZA
dc.contributor.authorGalbusera, Peteren_ZA
dc.contributor.authorBurton, Jamesen_ZA
dc.contributor.authorHoal, Eileenen_ZA
dc.contributor.authorYusnizar, Yulnawatien_ZA
dc.contributor.authorSumantri, Ceceen_ZA
dc.contributor.authorMoioli, Biancaen_ZA
dc.contributor.authorValentini, Alessioen_ZA
dc.contributor.authorStella, Alessandraen_ZA
dc.contributor.authorWilliams, John L.en_ZA
dc.contributor.authorAjmone-Marsan, Paoloen_ZA
dc.date.accessioned2019-09-23T07:36:26Z
dc.date.available2019-09-23T07:36:26Z
dc.date.issued2018
dc.descriptionCITATION: Colli, L., et al. 2018. New insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip data. Frontiers in Genetics, 9:53, doi:10.3389/fgene.2018.00053.
dc.descriptionThe original publication is available at https://www.frontiersin.org
dc.description.abstractENGLISH ABSTRACT: The domestic water buffalo is native to the Asian continent but through historical migrations and recent importations, nowadays has a worldwide distribution. The two types of water buffalo, i.e., river and swamp, display distinct morphological and behavioral traits, different karyotypes and also have different purposes and geographical distributions. River buffaloes from Pakistan, Iran, Turkey, Egypt, Romania, Bulgaria, Italy, Mozambique, Brazil and Colombia, and swamp buffaloes from China, Thailand, Philippines, Indonesia and Brazil were genotyped with a species-specific medium-density 90K SNP panel. We estimated the levels of molecular diversity and described population structure, which revealed historical relationships between populations and migration events. Three distinct gene pools were identified in pure river as well as in pure swamp buffalo populations. Genomic admixture was seen in the Philippines and in Brazil, resulting from importations of animals for breed improvement. Our results were largely consistent with previous archeological, historical and molecular-based evidence for two independent domestication events for river- and swamp-type buffaloes, which occurred in the Indo-Pakistani region and close to the China/Indochina border, respectively. Based on a geographical analysis of the distribution of diversity, our evidence also indicated that the water buffalo spread out of the domestication centers followed two major divergent migration directions: river buffaloes migrated west from the Indian sub-continent while swamp buffaloes migrated from northern Indochina via an east-south-eastern route. These data suggest that the current distribution of water buffalo diversity has been shaped by the combined effects of multiple migration events occurred at different stages of the post-domestication history of the species.en_ZA
dc.description.urihttps://www.frontiersin.org/articles/10.3389/fgene.2018.00053/full
dc.description.versionPublisher's version
dc.format.extent17 pagesen_ZA
dc.identifier.citationColli, L., et al. 2018. New insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip data. Frontiers in Genetics, 9:53, doi:10.3389/fgene.2018.00053
dc.identifier.issn1664-8021 (online)
dc.identifier.otherdoi:10.3389/fgene.2018.00053
dc.identifier.urihttp://hdl.handle.net/10019.1/106513
dc.language.isoen_ZAen_ZA
dc.publisherFrontiers Mediaen_ZA
dc.rights.holderAuthors retain copyrighten_ZA
dc.subjectWater buffalo -- Breedingen_ZA
dc.subjectWater buffaloen_ZA
dc.subjectGenomicsen_ZA
dc.subjectSingle nucleotide polymorphismsen_ZA
dc.titleNew insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip dataen_ZA
dc.typeArticleen_ZA
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