Browsing by Author "Smith, Logan Jason"
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- ItemThe detection of stress-related diseases: establishment of two unique methods to discover circulatory phospho- and glycoproteins(Stellenbosch : Stellenbosch University, 2023-12) Smith, Logan Jason; Essop, M. Faadiel ; Joseph, Danzil; Stellenbosch University. Faculty of Science. Dept. of Physiological Sciences.ENGLISH ABSTRACT: Introduction: Psychosocial stress has strong links to numerous chronic diseases related to the dysregulated activation of the physiological stress system. This heightens the burden of mortality as there is a robust relationship between chronic psychosocial stress and non- communicable diseases. Hence there is a robust impetus for the identification of novel, circulating biomarkers to earlier detect stress-related chronic diseases. Although protein post-translational modifications such as glycosylation and phosphorylation can act as putative markers of pathophysiology, their relatively low abundance complicates extraction and identification from samples with a high dynamic range. The main aim of this study was therefore to establish two unique enrichment methods for circulatory glycoprotein and phosphoprotein extraction that would then be applied in a preclinical model of chronic psychosocial stress. Methods: Phosphoprotein enrichment was performed using functionalized magnetic particles while glycoprotein enrichment occurred using lectin-bound magnetic particles. Both these methods were tested using a known purified phosphorylated and glycosylated protein and compared to bottom-up proteomics methodology using rat serum. The latter was obtained from a rat model of chronic stress that is well-established in our laboratory (n = 16 controls versus n = 16 stressed rats). These were randomly selected for proteomics analysis to assess the efficiency of retrieval in enriched versus unenriched samples. Fractions were analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and proteins visualized using Coomassie and specific fluorescent staining. Here, the relevant Pro-Q stains were employed for the identification of glycosylation and phosphorylation, respectively. The coupling of such enrichment methods to LC – tandem mass spectrometry (MS/MS) was enabled by employing various preparation steps such as deglycosylation and digestion. An exogenous protein was also included as part of the sample preparation to ensure quality control analysis of the LC-MS/MS experiment. Results: SDS-PAGE analyses and staining methods revealed non-specific enrichment with regards to intact protein retrieval. In addition, LC-MS/MS data demonstrated that enrichment using the current set of affinity materials was inadequate for glycopeptide and phosphopeptide retrieval in serum. Conclusion: A lack of enrichment indicates that stringent sample preparation is needed for biological materials with a high dynamic range. This may also be due to the porous nature of both materials employed for phospho- and glycoprotein/peptide enrichment respectively. A combination of enrichment and/or depletion methods may therefore be beneficial for deeper analysis of the blood proteome. These enrichment techniques and the subsequent sample preparation still require further optimization to derive more definitive conclusions in the chronic stress context.