Browsing by Author "Du Plessis, Keith R. (Keith Roland)"
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- ItemBiological indicators of copper-induced stress in soil(Stellenbosch : Stellenbosch University, 2002-03) Du Plessis, Keith R. (Keith Roland); Botha, Alfred; Wolfaardt, Gideon M.; Stellenbosch University. Faculty of Science. Dept. of Microbiology.ENGLISH ABSTRACT: The concentrations of copper (Cu) in vineyard soils of the Western Cape range from 0.1 to 20 ppm. However, more than 160 tons of the fungicide copper oxychloride are annually being sprayed on these vineyards. This has raised concerns that Cu may accumulate in these soils, resulting in a negative impact on the soil biological processes, especially since the soils in the Western Cape are slightly acidic, making Cu more mobile and available for soil organisms than would have been the case in alkaline soils. The goal of the initial part of this study was therefore to identify those soil microbial communities indigenous to the Western Cape, which are most susceptible to Cu-induced stress as a result of the addition of copper oxychloride. These potential bioindicators of Cu-induced stress were first searched for in uncultivated agricultural soil from Nietvoorbij experimental farm. Consequently, a series of soil microcosms was prepared by adding various concentrations of Cu as a component of copper oxychloride, to each of eight aliquots of soil: 0 (control), 10, 20, 30, 40, 50, 100, 500 and 1000 ppm. The resulting concentrations of exchangeable Cu in these microcosms were found to be 2 (control), 12,23,34,42,59, 126,516 and 1112 ppm. Selected microbial communities in each microcosm were subsequently monitored over a period of 245 days. It was found that the culturable microbial numbers did not provide a reliable indication of the effect of Cu on community integrity. However, analyses of terminal-restriction fragment length polymorphism (T-RFLP) community fingerprints and especially analyses of the whole community metabolic profiles, revealed that shifts in the soil microbial communities took place as the Cu concentration increased. Direct counts of soil protozoa also revealed that the addition of Cu to the soil impacted negatively on the numbers of these eukaryotes. To confirm these findings in other soil ecosystems, the impact of copper oxychloride on whole community metabolic profiles and protozoan numbers were investigated in soils from Koopmanskloof commercial farm and Nietvoorbij experimental farm. These potential bioindicators were subsequently monitored in a series of soil microcosms prepared for each soil type by adding the estimated amounts of 0 (control), 30, 100 and 1000 ppm Cu as a component of copper oxychloride to the soil. The results confirmed the fmdings that elevated levels of copper impact negatively on the metabolic potential and protozoan numbers of soil. Consequently, it was decided to investigate a combination of protozoan counts and metabolic profiling as a potential bioindicator for Cu-induced stress in soil. Data collected from all the microcosms containing exchangeable Cu concentrations ranging from 1 ppm to 1112 ppm was used to construct a dendrogram using carbon source utilization profiles in combination with protozoan counts. It was found that the microcosms grouped into clusters, which correlated with the concentration of exchangeable Cu in the soil. Under the experimental conditions used in this study, the combination of protozoan counts and metabolic profiling seemed to be a reliable indicator of Cu-induced stress. However, this bioindicator must be further investigated in other soil types using other types of stress inducing pollutants. In addition to the above fmdings it was also found that the numbers of soil protozoa was particularly susceptible to Cu-induced stress in soils with a low soil pH. This is in agreement with the fmdings of others on the bio-availability of heavy metals in low pH soils. In these soils, nutrient cycling as a result of protozoan activity, may therefore be particularly susceptible to the negative impact of copper to the soil.
- ItemCommunity-level analysis of the microbiology in constructed wetlands treating distillery effluent(Stellenbosch : University of Stellenbosch, 2006-04) Du Plessis, Keith R. (Keith Roland); Wolfaardt, Gideon M.; Botha, Alfred; University of Stellenbosch. Faculty of Science. Dept. of Microbiology.ENGLISH ABSTRACT: Constructed wetlands have been widely used in the treatment of industrial and domestic wastewater to reduce biological and chemical oxygen demand (BOD and COD), to remove nitrate and enteric viruses as well as to generally improve water quality. Distillery wastewater has a complex character due to high concentrations of sugars, lignins, hemicellulose, dextrins, resins, polyphenols and organic acids, leading to a high COD that may exceed 100 000 mg/L. The potential application for the treatment of distillery wastewater by means of constructed wetlands is relatively unexplored. In 1999 a study was initiated at Distell Goudini distillery, Western Cape, South Africa, to explore the possibility of using constructed wetlands to treat distillery wastewater. It was found that constructed wetlands do have the ability to treat distillery wastewater providing that the influent COD does not exceed 15 000 mg/L for extended periods and the correct substrate material is used. The present study expanded on the above-mentioned study and specifically aimed to provide information on the microbiological controls in wetland systems in an applied sense that may contribute to improved treatment efficiency. Furthermore, this project aimed to contribute to our fundamental understanding of the microbial ecology of constructed wetlands used for the treatment of distillery wastewater. This study revealed that a highly dynamic microbial composition exists within wetlands. Furthermore it was found that wetlands can efficiently remove COD even though a low degree of similarity exists between microbial communities in various zones of the same wetland and those between different wetlands, as well as low similarity between communities sampled from the same zone over time. This demonstrates that it will be difficult to define the ‘ideal’ degradative community in terms of microbiological criteria and serves as a reminder that various indicators should be considered for monitoring system health. Furthermore the shifts in microbial community composition illustrate the ability of microbial communities to adapt to changes in the environment without compromising their functional efficacy. When studying the attached microbial communities within wetland systems it was found that different morphotypes are detected at certain stages of biofilm development while some organisms are present at most phases of biofilm formation. Measurement of CO2 production and dissolved organic carbon (DOC) removal in laboratory scale columns showed that grazing protists had a notable effect on overall microbial activity and that organic loading influenced these predator-prey interactions. Interestingly, increased clogging of pores occurred in the presence of protists, resulting in reduced flow through the porous matrix. Terminalrestriction fragment length polymorphism (T-RFLP) analysis of biofilms on gravel in experimental wetlands indicated that the presence of protists and algae had an effect on the microbial community composition. Scanning electron microscopy (SEM) showed that the presence of algae also had an influence on biofilm structure suggesting that the algae provided labile nutrients that were utilized by the bacterial and yeast members of the community. Finally, augmentation with a commercial mixture or microbial populations isolated from distillery effluent demonstrated that the concentration at which supplements are applied influence degradative efficiency.