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Pedigree analysis of an ostrich breeding flock

dc.contributor.authorFair, M. D.en_ZA
dc.contributor.authorVan Wyk, J. B.en_ZA
dc.contributor.authorCloete, S. W. P. (Schalk Willem Petrus van der Merwe)en_ZA
dc.date.accessioned2013-07-03T08:19:43Z
dc.date.available2013-07-03T08:19:43Z
dc.date.issued2012
dc.identifier.citationFair, M. D., Van Wyk, J. B. & Cloete, S. W. P. 2012. Pedigree analysis of an ostrich breeding flock. South African Journal of Animal Science, 42(2):114-122, doi:10.4314/sajas.v42i2.3.
dc.identifier.issn2221-4062 (online)
dc.identifier.issn0375-1589 (print)
dc.identifier.otherdoi:10.4314/sajas.v42i2.3
dc.identifier.urihttp://hdl.handle.net/10019.1/82606
dc.descriptionCITATION: Fair, M. D., Van Wyk, J. B. & Cloete, S. W. P. 2012. Pedigree analysis of an ostrich breeding flock. South African Journal of Animal Science, 42(2):114-122, doi:10.4314/sajas.v42i2.3.
dc.descriptionThe original publication is available at http://www.sasas.co.za
dc.description.abstractPedigree records, maintained from 1978 to 2005 at the Oudtshoorn Research Farm, South Africa, of 40 074 birds of a pair-breeding ostrich flock were used to estimate the effective number of founders (fe), the effective number of ancestors (fa), the effective population size and the effective genome equivalents (fg) under random mating, to assess the genetic variability present in the population. The average level of completeness of the pedigrees was high (99.3%) in the first generation, and the average level of inbreeding (F), calculated from the pedigrees, was 0.51%. The reference population was defined as the 39 784 birds hatched from 1990 to 2005. The estimated measures of variability were fg = 47.3, fe = 59 and fa = 58, with an fe/fa ratio of 1.02. The numbers of ancestors responsible for 100%, 50% and 20% of the genes in the reference population were 254, 21 and 6, respectively. The largest individual contribution to the population hatched from 1990 to 2005 was from a male that was responsible for 4.85% of the genetic variability. The generation interval for the four selection pathways – calculated as the average age of parents when offspring that were kept for reproduction were born – were sire to son (7.74 ± 4.92), sire to daughter (7.77 ± 5.13), dam to son (7.50 ± 4.29) and dam to daughter (7.90 ± 4.92). The average generation interval of the reference population was 7.72 ± 4.79 years. The linear regressions of mean annual individual rate of inbreeding on year of birth for the two distinct periods 1995–2002 and 2003–2005 were 0.08% and -0.07% per year, respectively. The estimate of effective population size (Ne), computed via the increase in the individual rate of inbreeding, was 112.7. Estimates of Neusing the alternative methods of tracing the numbers of generations were 73.6, 177.4 and 95.3 for complete, maximum and equivalent complete generations. The results of this study indicated that the population under study was at an acceptable level of genetic variability.
dc.description.urihttp://www.sasas.co.za/pedigree-analysis-ostrich-breeding-flock
dc.format.extent9 pages
dc.language.isoen
dc.publisherSouth African Society for Animal Science
dc.subjectOstrichesen_ZA
dc.titlePedigree analysis of an ostrich breeding flocken_ZA
dc.typeArticle
dc.description.versionPublisher's version
dc.rights.holderAuthors retain copyright


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