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Minimum information about a simulation experiment (MIASE)

Waltemath, Dagmar; Adams, Richard; Beard, Daniel A.; Bergmann, Frank T.; Balla, Upinder S.; Britten, Randall; Chelliah, Vijayalakshmi; Cooling, Michael T.; Cooper, Jonathan; Crampin, Edmund J.; Garny, Alan; Hoops, Stefan; Hucka, Michael; Hunter, Peter; Klipp, Edda; Laibe, Camille; Miller, Andrew K.; Moraru, Ion; Nickerson, David; Nielsen, Poul; Nikolski, Macha; Sahle, Sven; Sauro, Herbert M.; Schmidt, Henning; Snoep, Jacky L.; Tolle, Dominic; Wolkenhauer, Olaf; Le Novere, Nicolas (PLOS, 2011-04)

Reproducibility of experiments is a basic requirement for science. Minimum Information (MI) guidelines have proved a helpful means of enabling reuse of existing work in modern biology. The Minimum Information Required in ...

Reproducible computational biology experiments with SED-ML -The Simulation Experiment Description Markup Language

Waltemath, Dagmar; Adams, Richard; Bergmann, Frank T.; Hucka, Michael; Kolpakov, Fedor; Miller, Andrew K.; Moraru, Ion I.; Nickerson, David; Sahle, Sven; Snoep, Jacky L.; Le Novere, Nicolas (BioMed Central, 2011-12)

Background: The increasing use of computational simulation experiments to inform modern biological research creates new challenges to annotate, archive, share and reproduce such experiments. The recently published Minimum ...

Workflow for data analysis in experimental and computational systems biology : using Python as glue

Badenhorst, Melinda; Barry, Christopher J.; Swanepoel, Christiaan J.; Van Staden, Charles Theo; Wissing, Julian; Rohwer, Johann M. (MDPI, 2019-07-18)

ENGLISH ABSTRACT: Bottom-up systems biology entails the construction of kinetic models of cellular pathways by collecting kinetic information on the pathway components (e.g., enzymes) and collating this into a kinetic ...

Strategies and opportunities for promoting bioinformatics in Zimbabwe

Shoko, Ryman; Manasa, Justen; Maphosa, Mcebisi; Mbanga, Joshua; Mudziwapasi, Reagan; Nembaware, Victoria; Sanyika, Walter T.; Tinago, Tawanda; Chikwambi, Zedias; Mawere, Cephas; Matimba, Alice; Mugumbate, Grace; Mufandaedza, Jonathan; Mulder, Nicola; Patterton, Hugh (Public Library of Science, 2018-11-29)

Introduction: The increasing applications of advanced technologies in life sciences are fueling the growth of data from genome sequencing, functional genomics experiments, and macromolecular structure determination. ...