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SEEK : a systems biology data and model management platform

Wolstencroft, Katherine; Owen, Stuart; Krebs, Olga; Nguyen, Quyen; Stanford, Natalie J.; Golebiewski, Martin; Weidemann, Andreas; Bittkowski, Meik; An, Lihua; Shockley, David; Snoep, Jacky L.; Mueller, Wolfgang; Goble, Carole (BioMed Central, 2015-07-11)

Background: Systems biology research typically involves the integration and analysis of heterogeneous data types in order to model and predict biological processes. Researchers therefore require tools and resources to ...

The evolution of standards and data management practices in systems biology

Stanford, Natalie J.; Wolstencroft, Katherine; Golebiewski, Martin; Kania, Renate; Juty, Nick; Tomlinson, Christopher; Owen, Stuart; Butcher, Sarah; Hermjakob, Henning; Le Novere, Nicolas; Mueller, Wolfgang; Snoep, Jacky; Goble, Carole (EMBO, 2015-12)

Systems biology involves the integration of multiple heterogeneous data sets, in order to model and predict biological processes. The domain's interdisciplinary nature requires data, models and other research assets to be ...

FAIRDOMHub : a repository and collaboration environment for sharing systems biology research

Wolstencroft, Katherine; Krebs, Olga; Snoep, Jacky L.; Stanford, Natalie J.; Bacall, Finn; Golebiewski, Martin; Kuzyakiv, Rostyk; Nguyen, Quyen; Owen, Stuart; Soiland-Reyes, Stian; Straszewski, Jakub; Van Niekerk, David D.; Williams, Alan R.; Malmstrom, Lars; Rinn, Bernd; Muller, Wolfgang; Goble, Carole (Oxford University Press on behalf of Nucleic Acids Research, 2017)

The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models (https://fairdomhub.org/) for the Systems Biology community. It is a web-accessible ...

Identifiers for the 21st century : how to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry, Julie A.; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; Courtot, Melanie; Deck, John; Dumontier, Michel; Fellows, Donal K.; Gonzalez-Beltran, Alejandra; Gormanns, Philipp; Grethe, Jeffrey; Hastings, Janna; Heriche, Jean-Karim; Hermjakob, Henning; Ison, Jon C.; Jimenez, Rafael C.; Jupp, Simon; Kunze, John; Laibe, Camille; Le Novere, Nicolas; Malone, James; Martin, Maria Jesus; McEntyre, Johanna R.; Morris, Chris; Muilu, Juha; Muller, Wolfgang; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sariyar, Murat; Snoep, Jacky L.; Soiland-Reyes, Stian; Stanford, Natalie J.; Swainston, Neil; Washington, Nicole; Williams, Alan R.; Wimalaratne, Sarala M.; Winfree, Lilly M.; Wolstencroft, Katherine; Goble, Carole; Mungall, Christopher J.; Haende, Melissa A.; Parkinson, Helen (Public Library of Science, 2017-06-29)

In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on ...